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author | upstream source tree <ports@midipix.org> | 2015-03-15 20:14:05 -0400 |
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committer | upstream source tree <ports@midipix.org> | 2015-03-15 20:14:05 -0400 |
commit | 554fd8c5195424bdbcabf5de30fdc183aba391bd (patch) | |
tree | 976dc5ab7fddf506dadce60ae936f43f58787092 /libstdc++-v3/testsuite/ext/pb_ds/example/trie_dna.cc | |
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Diffstat (limited to 'libstdc++-v3/testsuite/ext/pb_ds/example/trie_dna.cc')
-rw-r--r-- | libstdc++-v3/testsuite/ext/pb_ds/example/trie_dna.cc | 118 |
1 files changed, 118 insertions, 0 deletions
diff --git a/libstdc++-v3/testsuite/ext/pb_ds/example/trie_dna.cc b/libstdc++-v3/testsuite/ext/pb_ds/example/trie_dna.cc new file mode 100644 index 000000000..28c895680 --- /dev/null +++ b/libstdc++-v3/testsuite/ext/pb_ds/example/trie_dna.cc @@ -0,0 +1,118 @@ +// -*- C++ -*- + +// Copyright (C) 2005, 2006, 2007, 2009 Free Software Foundation, Inc. +// +// This file is part of the GNU ISO C++ Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License as published by the Free Software +// Foundation; either version 3, or (at your option) any later +// version. + +// This library is distributed in the hope that it will be useful, but +// WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. + +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING3. If not see +// <http://www.gnu.org/licenses/>. + + +// Copyright (C) 2004 Ami Tavory and Vladimir Dreizin, IBM-HRL. + +// Permission to use, copy, modify, sell, and distribute this software +// is hereby granted without fee, provided that the above copyright +// notice appears in all copies, and that both that copyright notice +// and this permission notice appear in supporting documentation. None +// of the above authors, nor IBM Haifa Research Laboratories, make any +// representation about the suitability of this software for any +// purpose. It is provided "as is" without express or implied +// warranty. + +/** + * @file trie_dna_example.cpp + * An example showing how to use a trie for storing DNA strings. + */ + +/** + * This example shows how to use a PATRICIA trie for storing + DNA strings. The main point is writing element-access traits + for these strings. +*/ + +#include <cassert> +#include <iostream> +#include <cstdlib> +#include <ext/pb_ds/assoc_container.hpp> +#include <ext/pb_ds/trie_policy.hpp> + +using namespace std; +using namespace __gnu_pbds; + +// DNA is represented by a string. +typedef string dna_t; + +// Following is an element access traits for a DNA string. +struct dna_string_e_access_traits +{ +public: + typedef size_t size_type; + typedef dna_t key_type; + typedef const key_type& const_key_reference; + typedef char e_type; + typedef string::const_iterator const_iterator; + + enum + { + // Number of distinct elements. This is 4 = |{'A', 'C', 'G', 'T'}| + max_size = 4 + }; + + // Returns a const_iterator to the firstelement of r_key. + inline static const_iterator + begin(const_key_reference r_key) + { return r_key.begin(); } + + // Returns a const_iterator to the after-lastelement of r_key. + inline static const_iterator + end(const_key_reference r_key) + { return r_key.end(); } + + // Maps an element to a position. + inline static size_t + e_pos(e_type e) + { + switch(e) + { + case 'A': + return 0; + case 'C': + return 1; + case 'G': + return 2; + case 'T': + return 3; + default: + std::abort(); + }; + } +}; + +// A PATRICIA trie with DNA string element-access traits. +typedef dna_string_e_access_traits traits_type; +typedef trie<dna_t, string, traits_type> trie_type; + +int main() +{ + trie_type t; + + // Now map some DNAs to diseases in namespace STD. + t["ACCGGTTACTGGTA"] = "gonorrhea"; + t["CCGTTATCGGTA"] = "syphlis"; + + // Check gonorrhea already contracted. + assert(t.find("ACCGGTTACTGGTA") != t.end()); + + return 0; +} + |